romi_run_task

Create a dummy database

To quickly create a dummy database, let's use the temporary folder /tmp:

mkdir -p /tmp/dummy_db/dummy_dataset  # create dummy database and dataset
touch /tmp/dummy_db/romidb  # add the romidb marker (empty file)
export DB_LOCATION='/tmp/dummy_db'  # add database location as an environment variable, 'DB_LOCATION', to current shell

Test the CLI with DummyTask

To test the CLI romi_run_task:

romi_run_task DummyTask $DB_LOCATION/dummy_dataset

You should get a "Luigi Execution Summary" similar to this:

===== Luigi Execution Summary =====

Scheduled 1 tasks of which:
* 1 ran successfully:
    - 1 DummyTask(scan_id=)

This progress looks :) because there were no failed tasks or missing dependencies

===== Luigi Execution Summary =====

As no TOML configuration file was provided, you should get a pipeline.toml with only a retcode and a version sections at the root of the dummy_dataset/ directory.

The dummy_database tree structure should look like this:

dummy_database/
├── dummy_dataset/
│   ├── DummyTask__**********/
│   ├── files.json
│   ├── metadata/
│   │   └── DummyTask__**********.json
│   └── pipeline.toml
└── romidb